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SonarQube in Eclipse is pre-configured to access a local SonarQube server listening on http://localhost:9000/. You can edit this server, delete it or add a new oneones.
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Linking a Project to One Analyzed on a SonarQube Server

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To do so, right-click on the project in the Project Explorer, and then Configure > Associate with SonarQube...:

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In the SonarQube project text field, start typing the name of the project and select it in the list box:

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Click on Finish. Your project is now associated to one analyzed on your SonarQube server.

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To do so, right-click on the project in the Project Explorer, and then SonarQube > Change project associationProject Association...:

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Unlinking a Project

To do so, right-click on the project in the Project Explorer, and then SonarQube > Remove SonarQube Nature:

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Advanced Configuration

Severity of SonarQube Markers

You can set the severity of SonarQube markers and SonarQube markers for new violations by going to Additional settings (such as markers for new issues) are available through Window > Preferences > SonarQube.:

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You are now all set with configuration and you can start using SonarQube in Eclipse.